Publications & research outputs

Explore the research record.

Search peer-reviewed publications, current manuscripts, book chapters, technical and advisory reports, and other scholarly outputs spanning fisheries genomics, conservation, evolution and applied science.

Updated September 2026.

200+Peer-reviewed publications
8,000+Citations
53h-index

194 career-wide records shown. The public list uses records explicitly attributed to Ian Bradbury in the updated master database; internal audit fields and records without confirmed individual attribution are not displayed. Journal-article titles are linked to the verified DOI/publisher page where available; other records link to an exact-title Google Scholar search.

2026 · Current manuscript · Journal manuscript

Trade-offs in population structure correction: Rethinking detection and prediction of genome–environment relationships across species

Kess, T.; Van Wyngaarden, M.; Beck, S.; Davenport, D.; Nugent, C. M.; Marquis, B.; Lehnert, S.; Arno, H.; Rivkin, R.; Fijarczyk, A. M.; Lenz, P.; Isabel, N.; Bradbury, I. R;. 2026. Trade-offs in population structure correction: Rethinking detection and prediction of genome–environment relationships across species. Molecular Ecology Resources.

Evolutionary genomicsJournal manuscript
2026 · Current manuscript · Journal manuscript

No Y, No Problem: A chromosome-scale reference genome reveals the genetic architecture of sex in North Atlantic Sebastes

Davenport, D.; Kess, T.; Breech, T. M.; Smith, N.; Parent, E.; Jarvis, E. D.; Formenti, G.; Balacco, J.; Parent, G.; Ings, D.; Kumar, R.; Walkusz, W.; Lowen, T.; Boudreau, S.; Juillet, C.; Purchase, C.; Bentzen, P.; Bradbury, I. R;. 2026. No Y, No Problem: A chromosome-scale reference genome reveals the genetic architecture of sex in North Atlantic Sebastes. BMC Biology.

Evolutionary genomicsJournal manuscript
2026 · Current manuscript · Journal manuscript

SINEs as eDNA markers increase detection of rare species

Beal, S.; Watson, K. B.; Paterson, I.; Broome, J.; Bradbury, I. R.; Bentzen, P;. 2026. SINEs as eDNA markers increase detection of rare species. Environmental DNA.

eDNA & biodiversityJournal manuscript
2026 · Current manuscript · Journal manuscript

Genomic evidence of environmentally associated intraspecific diversity in two keystone northern marine copepods

Martchenko, D.; Davenport, D.; DiBacco, C.; Johnson, C. L.; Kess, T.; McBride, M. C.; Gillett, R.; Pepin, P.; Bradbury, I. R;. 2026. Genomic evidence of environmentally associated intraspecific diversity in two keystone northern marine copepods. Evolutionary Applications.

Evolutionary genomicsJournal manuscript
2026 · Accepted · Journal manuscript

Introgression and outbreeding depression following anthropogenically-induced secondary contact between anadromous and resident Atlantic salmon (Salmo salar)

MacPhail, C. S. T.; Fleming, I. A.; Kess, T.; Smith, N.; Bradbury, I. R;. 2026. Introgression and outbreeding depression following anthropogenically-induced secondary contact between anadromous and resident Atlantic salmon (Salmo salar). Evolutionary Applications.

Atlantic salmonJournal manuscript
2026 · Accepted · Journal manuscript

Capitalizing on genomic advances to determine the adaptive potential and resilience of Canadian ecosystems to climate change – the GenARCC project

Bradbury, I. R.; Arbuthnott, D.; Bilkhu, S.; Feurtado, J. A.; Harkness, B. A. S.; Kess, T.; Lehnert, S. J.; Richardson, E. S.; Robertson, G. J.; Séguin, A.; Isabel, N.; Soolanayakanahally, R. Y.; Vankosky, M. A.; Macklin, J. A;. 2026. Capitalizing on genomic advances to determine the adaptive potential and resilience of Canadian ecosystems to climate change – the GenARCC project. FACETS.

Climate adaptationJournal manuscript
2026 · Accepted · Journal manuscript

Compounding impacts – Genomic exploration of the potential effect of domestic introgression on climate adaptation in Atlantic salmon (Salmo salar)

Arno, H.; Kess, T.; Duffy, S.; Marquis, B.; Beck, S. V.; Lehnert, S. J.; Fleming, I. A.; Bradbury, I. R;. 2026. Compounding impacts – Genomic exploration of the potential effect of domestic introgression on climate adaptation in Atlantic salmon (Salmo salar). Evolutionary Applications.

Atlantic salmonJournal manuscript
2026 · Current manuscript · Journal manuscript

Interpreting relationships among MHC, parasites, and secondary sexual colouration in a natural system

Love, A. E.; Lighten, J.; van Oosterhout, C.; Papadopulos, A. S. T.; King, S. D.; Paterson, I. G.; Delaire, L. C.; Baillie, L.; Bradbury, I. R.; Fox, J. A.; Perez-Jvostov, F.; Dargent, F.; Scott, M.; Fussmann, G. F.; Hendry, A. P.; Bentzen, P.; Gotanda, K. M;. 2026. Interpreting relationships among MHC, parasites, and secondary sexual colouration in a natural system. Molecular Ecology.

Marine & aquatic ecologyJournal manuscript
2026 · Current manuscript · Journal manuscript

Atlantic salmon threatened across its native range by aquaculture escapees

Bolstad, G. H.; Bradbury, I. R.; Gilbey, J.; Guðmundsson, L. A.; Karlsson, S.; Kess, T.; McGinnity, P.; Thorstad, E. B.; Wringe, B. F.; Kennedy, R.; Palm, S.; Prodöhl, P. A;. 2026. Atlantic salmon threatened across its native range by aquaculture escapees. Science Advances.

Atlantic salmonJournal manuscript
2026 · Current manuscript · Journal manuscript

A Comparative Evaluation of the Efficacy of the Tobique River Atlantic Salmon Smolt-to-Adult Supplementation Program

Holborn, M.; McWilliam, S.; Hogan, J. D.; Jones, R.; Moreau, D.; Brodeur, N.; de Mestral, L.; Bradbury, I. R.; Reader, J.; Anderson, E. C.; Wringe, B;. 2026. A Comparative Evaluation of the Efficacy of the Tobique River Atlantic Salmon Smolt-to-Adult Supplementation Program. Canadian Journal of Fisheries and Aquatic Sciences.

Atlantic salmonJournal manuscript
2026 · Current manuscript · Journal manuscript

The Vertebrate Genomes Project Phase I: A global reference genome resource

Formenti, G.; Absolon, D. E.; Abueg, L. A. L.; Ackerman, F.; Al-Ajli, F. O.; Aleixo, A.; Antunes, A.; Arcila, D.; Audet, J.-N.; Balacco, J. R.; Beavan, A. J. S.; Belov, K.; Betancur-R., R.; Bidwell, S. L.; Biegler, M. T.; Bista, I.; Blaxter, M.; Braasch, I.; Bradbury, I. R.; et al;. 2026. The Vertebrate Genomes Project Phase I: A global reference genome resource. Nature (submitted); bioRxiv preprint.

Evolutionary genomicsJournal manuscript
2026 · Current manuscript · Journal manuscript

Chromosome-scale reference genome identifies differences in genomic architecture and mechanisms of sex determination in Fundulus species of conservation concern

Haché, K.; Bentzen, P.; Kess, T.; Davenport, D.; Duffy, S.; Smith, N.; Sargent, P.; Wringe, B.; Dion-Côté, A.-M.; Dalziel, A.; Bradbury, I. R;. 2026. Chromosome-scale reference genome identifies differences in genomic architecture and mechanisms of sex determination in Fundulus species of conservation concern. Molecular Ecology Resources.

Evolutionary genomicsJournal manuscript
2026 · Published · Journal article

Widespread genetic similarity between Northwest Atlantic populations of the horse mussel, Modiolus modiolus

Van Wyngaarden, M.; Jeffery, N. W.; Sameoto, J. A.; Cronmiller, E.; McBride, M. C.; Wilson, B. R.; Raper, J.; Trela, O.; Stanley, R. R. E.; Kess, T.; Layton, K. K. S.; Bradbury, I. R.; Wringe, B. F;. 2026. Widespread genetic similarity between Northwest Atlantic populations of the horse mussel, Modiolus modiolus. Conservation Genetics 27(2): 48.

Evolutionary genomicsJournal article
2026 · Published · Journal article

Fine-scale genomic differentiation remains despite massive demographic decline in an endangered Atlantic salmon (Salmo salar) population

Bradbury, I. R.; Kess, T.; Langille, B.; Duffy, S.; Lehnert, S. J.; Van Wyngaarden, M.; Watson, B.; Hinks, R.; Van Leeuwen, T.; Dempson, J. B;. 2026. Fine-scale genomic differentiation remains despite massive demographic decline in an endangered Atlantic salmon (Salmo salar) population. Conservation Genetics 27(1): 7.

Atlantic salmonJournal article
2026 · Published · International Report

The International Sampling Program: continent of origin and biological characteristics of Atlantic salmon (Salmo salar) collected at West Greenland in 2020 and 2021

Sheehan, Timothy F; Gargan, Paddy; Kerr, Brendan; Nevoux, Marie; Ravn, Malu; Nygaard, Rasmus; Bradbury, Ian R; Robertson, Martha J; Ó Maoiléidigh, Niall;. 2026. The International Sampling Program: continent of origin and biological characteristics of Atlantic salmon (Salmo salar) collected at West Greenland in 2020 and 2021. US Dept Commer Northeast Fish Sci Cent Ref Doc 46046.

Atlantic salmonInternational Report
2025 · Published · International Report

The International Sampling Program: Continent of Origin and Biological Characteristics of Atlantic Salmon Collected at West Greenland in 2024

Sheehan, T. F.; Falke, L. P.; Madden, M. J.; Nevoux, M.; Person, L.; Sherratt, S.; Nygaard, R.; Bradbury, I. R.; Robertson, M. J.. 2025. The International Sampling Program: Continent of Origin and Biological Characteristics of Atlantic Salmon Collected at West Greenland in 2024. Northeast Fisheries Science Center Reference Document: 25-07; 62 p..

Atlantic salmonInternational Report
2025 · Published · Journal article

Genomic data reveal a lack of range-wide genetic structure for a broadly distributed ommastrephid, Northern shortfin squid (Illex illecebrosus), in the Northwest Atlantic Ocean

Baker, K. D.; Kess, T.; Hendrickson, L.; Malayny, C.; Smith, N.; Bradbury, I. R;. 2025. Genomic data reveal a lack of range-wide genetic structure for a broadly distributed ommastrephid, Northern shortfin squid (Illex illecebrosus), in the Northwest Atlantic Ocean. ICES Journal of Marine Science 82(11): fsaf201.

Evolutionary genomicsJournal article
2025 · Published · Technical Report

Documentation of an Effective Method for Undertaking Molecular Genomics in a Mollusc: DNA Extraction, Microsatellite Analysis, RAD-seq, and Whole Genome Sequencing in the Horse Mussel (Modiolus Modiolus)

Van Wyngaarden, Mallory; McBride, MC; Cronmiller, E; Jeffery, NW; Kess, T; Bradbury, IR; Sameoto, JA; Wringe, BF;. 2025. Documentation of an Effective Method for Undertaking Molecular Genomics in a Mollusc: DNA Extraction, Microsatellite Analysis, RAD-seq, and Whole Genome Sequencing in the Horse Mussel (Modiolus Modiolus). Canadian Technical Reort of Fisheries and Aquatic Sciences 3694.

Evolutionary genomicsTechnical Report
2025 · Published · Journal article

The genomic consequences of fisheries collapse in a marine fish

Delgado, M. L.; Van Wyngaarden, M.; Einfeldt, A. L.; McCracken, G. R.; Paterson, I.; Morris, C.; Bradbury, I. R.; Bentzen, P.; Ruzzante, D. E;. 2025. The genomic consequences of fisheries collapse in a marine fish. ICES Journal of Marine Science 82(9): fsaf155.

Evolutionary genomicsJournal article
2025 · Published · Journal article

A century of anthropogenic perturbations impact genomic signatures of the iconic migratory Atlantic cod

Helmerson, C.; Durant, J. M.; Hoff, S. N. K.; Brieuc, M. S. O.; Berg, P. R.; Jorde, P. E.; Maurstad, M. F.; Bradbury, I. R.; Kjesbu, O. S.; Godiksen, J. A.; Stenseth, N. C.; Star, B.; Jakobsen, K. S.; Jentoft, S;. 2025. A century of anthropogenic perturbations impact genomic signatures of the iconic migratory Atlantic cod. Science Advances 11(31): eadp3342.

Atlantic codJournal article
2025 · Published · Journal article

Developing socio-ecological indicators for changing Northern Coastal environments

Miatta, M.; Snelgrove, P. V. R.; Bates, A. E.; Bailey, M.; Bradbury, I. R.; Cadman, R.; Campanyà-Llovet, N.; Clinton, M. E.; Cote, D.; Denniston, M.; de Young, B.; Gregory, R. S.; King, B. G. C.; Kourantidou, M.; Layton, K. K. S.; McBride, C. E.; Oliver, E. C. J.; Sipler, R. E.; Ziegler, S. E;. 2025. Developing socio-ecological indicators for changing Northern Coastal environments. Facets 10: 1-18.

Marine & aquatic ecologyJournal article
2025 · Published · Journal article

eDNA metabarcoding and whole genome sequencing detect European–American eel hybrids in northeastern Canada

Crowley, S. E.; Kess, T.; Bentzen, P.; Neville, V. K.; Bloom, C.; Smith, N.; Fahner, N.; Berghuis, L.; Hobrecker, K.; Hajibabaei, M.; Duffy, S. J.; Bradbury, I. R;. 2025. eDNA metabarcoding and whole genome sequencing detect European–American eel hybrids in northeastern Canada. Canadian Journal of Fisheries and Aquatic Sciences 82: 1-11.

Atlantic codJournal article
2025 · Published · Journal article

Improved estimation of aquaculture associated European introgression in a captive breeding program for endangered Atlantic salmon

Holborn, M. K.; Kess, T.; Nugent, C. M.; Brodeur, N. N.; Adesola, J.; Cronmiller, E.; Hamilton, L. C.; Jones, R. A.; Lenentine, B. L.; MacDonnell, A.; McBride, M.; Messmer, A.; de Mestral, L.; Moreau, D. T. R.; Wilson, T.; Bradbury, I. R.; Wringe, B. F;. 2025. Improved estimation of aquaculture associated European introgression in a captive breeding program for endangered Atlantic salmon. Conservation Genetics 26(2): 235-247.

Atlantic salmonJournal article
2025 · Published · Journal article

Genomic and machine learning‐based screening of aquaculture‐associated introgression into at‐risk wild North American Atlantic salmon (Salmo salar) populations

Nugent, C. M.; Kess, T.; Brachmann, M. K.; Langille, B. L.; Holborn, M. K.; Beck, S. V.; Smith, N.; Duffy, S. J.; Lehnert, S. J.; Wringe, B. F.; Bentzen, P.; Bradbury, I. R;. 2025. Genomic and machine learning‐based screening of aquaculture‐associated introgression into at‐risk wild North American Atlantic salmon (Salmo salar) populations. Molecular Ecology Resources 25(5): e13811.

Atlantic salmonJournal article
2024 · Published · International Report

The International Sampling Program: continent of origin and biological characteristics of Atlantic salmon (Salmo salar) collected at West Greenland in 2023

Sheehan, T. F.; Hawkes, J. P.; Kelly, S.; McLauren, S.; Morris, B.; Nygaard, R.; Bradbury, I. R.; Robertson, M. J.. 2024. The International Sampling Program: continent of origin and biological characteristics of Atlantic salmon (Salmo salar) collected at West Greenland in 2023. Northeast Fisheries Science Center Reference Document: 24-09; 60 p..

Atlantic salmonInternational Report
2024 · Published · CSAS Report

Status of Atlantic Salmon (Salmo salar L.) stocks within the Newfoundland and Labrador Region (Salmon Fishing Areas 1–14B) in 2022

Kelly, NI; Fitzsimmons, MG; Poole, R; Dempson, JB; Van Leeuwen, T; Loughlin, K; Lehnert, S; Robertson, MJ; Bradbury, I;. 2024. Status of Atlantic Salmon (Salmo salar L.) stocks within the Newfoundland and Labrador Region (Salmon Fishing Areas 1–14B) in 2022. DFO Canadian Science Advisory Secretariat Research Document.

Atlantic salmonCSAS Report
2024 · Published · Journal article

Population divergence manifested by genomic rearrangements in a keystone Arctic species with high gene flow

Hoff, S. N. K.; Maurstad, M. F.; Le Moan, A.; Ravinet, M.; Pampoulie, C.; Vieweg, I.; Collard, F.; Moiseev, D.; Bradbury, I. R.; Tørresen, O. K.; Godiksen, J. A.; Hop, H.; Renaud, P. E.; Nahrgang, J.; Jakobsen, K. S.; Præbel, K.; Durant, J. M.; Jentoft, S;. 2024. Population divergence manifested by genomic rearrangements in a keystone Arctic species with high gene flow. bioRxiv: 2024.06. 28.597535.

Evolutionary genomicsJournal article
2024 · Published · Journal article

A review of factors potentially contributing to the long-term decline of Atlantic Salmon in the Conne River, Newfoundland, Canada

Dempson, J. B.; Van Leeuwen, T. E.; Bradbury, I. R.; Lehnert, S. J.; Coté, D.; Cyr, F.; Pretty, C.; Kelly, N. I;. 2024. A review of factors potentially contributing to the long-term decline of Atlantic Salmon in the Conne River, Newfoundland, Canada. Reviews in Fisheries Science & Aquaculture 32(3): 479-504.

Atlantic salmonJournal article
2024 · Published · Journal article

Variable parallelism in the genomic basis of age at maturity across spatial scales in Atlantic Salmon

Kess, T.; Lehnert, S. J.; Bentzen, P.; Duffy, S.; Messmer, A.; Dempson, J. B.; Newport, J.; Whidden, C.; Robertson, M. J.; Chaput, G.; Breau, C.; April, J.; Gillis, C.-A.; Kent, M.; Nugent, C. M.; Bradbury, I. R;. 2024. Variable parallelism in the genomic basis of age at maturity across spatial scales in Atlantic Salmon. Ecology and Evolution 14(4): e11068.

Atlantic salmonJournal article
2024 · Published · Journal article

Predicting the future of our oceans—evaluating genomic forecasting approaches in marine species

Layton, K. K. S.; Brieuc, M. S. O.; Castilho, R.; Diaz-Arce, N.; Estévez-Barcia, D.; Fonseca, V. G.; Fuentes-Pardo, A. P.; Jeffery, N. W.; Jiménez-Mena, B.; Junge, C.; Kaufmann, J.; Leinonen, T.; Maes, S. M.; McGinnity, P.; Reed, T. E.; Reisser, C. M. O.; Silva, G.; Vasemägi, A.; Bradbury, I. R;. 2024. Predicting the future of our oceans—evaluating genomic forecasting approaches in marine species. Global Change Biology 30(3): e17236.

Evolutionary genomicsJournal article
2024 · Published · Journal article

eDNA metabarcoding reveals riverine fish community structure and climate associations in northeastern Canada

Crowley, S. E.; Bentzen, P.; Kess, T.; Duffy, S. J.; Messmer, A. M.; Watson, B.; Dempson, J. B.; Keefe, D. G.; Perry, R. C.; Marquis, B.; Hajibabaei, M.; Fahner, N.; Berghuis, L.; Hobrecker, K.; Bradbury, I. R;. 2024. eDNA metabarcoding reveals riverine fish community structure and climate associations in northeastern Canada. Environmental DNA 6(1): e517.

Atlantic codJournal article
2024 · Published · Journal article

Post‐glacial recolonization and multiple scales of secondary contact contribute to contemporary Atlantic salmon (Salmo salar) genomic variation in North America

Nugent, C. M.; Kess, T.; Langille, B. L.; Beck, S. V.; Duffy, S.; Messmer, A.; Smith, N.; Lehnert, S. J.; Wringe, B. F.; Kent, M.; Bentzen, P.; Bradbury, I. R;. 2024. Post‐glacial recolonization and multiple scales of secondary contact contribute to contemporary Atlantic salmon (Salmo salar) genomic variation in North America. Journal of Biogeography 51(9): 1767-1782.

Atlantic salmonJournal article
2023 · Published · CSAS Report

Pre-COSEWIC Review of Anadromous Atlantic Salmon (Salmo salar) in Canada, Part 1: Designatable Units

Lehnert, S. J.; Bradbury, I. R.; April, J.; Wringe, B. F.; Van Wyngaarden, M.; Bentzen, P.. 2023. Pre-COSEWIC Review of Anadromous Atlantic Salmon (Salmo salar) in Canada, Part 1: Designatable Units. DFO Canadian Science Advisory Secretariat Research Document: 2023/026.

Atlantic salmonCSAS Report
2023 · Published · CSAS Report

Examen pré-COSEPAC du saumon atlantique (Salmo salar) anadrome au Canada, partie 1: Unités désignables

Lehnert, SJ; Bradbury, IR; April, J; Wringe, BF; Van Wyngaarden, M; Bentzen, P;. 2023. Examen pré-COSEPAC du saumon atlantique (Salmo salar) anadrome au Canada, partie 1: Unités désignables. DFO Canadian Science Advisory Secretariat Research Document.

Marine & aquatic ecologyCSAS Report
2023 · Published · International Report

Working Group on the Application of Genetics for Fisheries and Aquaculture (WGAGFA)

Baillie, Shauna; Bekkevold, Dorte; Bradbury, Ian R; Boudry, Pierre; Servane Brieuc, Marine; Calboli, Federico; Oriol, Canals; Castilho, Rita; Coscia, Ilaria; Coulson, Mark;. 2023. Working Group on the Application of Genetics for Fisheries and Aquaculture (WGAGFA). ICES Scientific Reports 5(99).

Evolutionary genomicsInternational Report
2023 · Published · International Report

Working Group on the Application of Genetics for Fisheries and Aquaculture (WGAGFA)

Rodriguez-Ezpeleta, Naiara; Baillie, Shauna; Bekkevold, Dorte; Bradbury, Ian R; Boudry, Pierre; Brieuc, Marine Servane; Calboli, Federico; Canals, Oriol; Castilho, Rita; Coulson, Mark W;. 2023. Working Group on the Application of Genetics for Fisheries and Aquaculture (WGAGFA). ICES WGAGFM Report 2014.

Evolutionary genomicsInternational Report
2023 · Published · Journal article

Experimental comparison of changes in relative survival and fitness-related traits of wild, farm, and hybrid Atlantic salmon Salmo salar in nature

San Román, I. C.; Bradbury, I. R.; Crowley, S. E.; Duffy, S. J.; Islam, S. S.; Fleming, I. A;. 2023. Experimental comparison of changes in relative survival and fitness-related traits of wild, farm, and hybrid Atlantic salmon Salmo salar in nature. Aquaculture Environment Interactions 15: 323-337.

Atlantic salmonJournal article
2023 · Published · Journal article

Fine‐scale environmentally associated spatial structure of lumpfish (Cyclopterus lumpus) across the Northwest Atlantic

Langille, B. L.; Kess, T.; Brachmann, M.; Nugent, C. M.; Messmer, A.; Duffy, S. J.; Holborn, M. K.; Van Wyngaarden, M.; Knutsen, T. M.; Kent, M.; Boyce, D.; Gregory, R. S.; Gauthier, J.; Fairchild, E. A.; Pietrak, M.; Eddy, S.; Garcia de Leaniz, C.; Consuegra, S.; Whittaker, B.; Bentzen, P.; Bradbury, I. R;. 2023. Fine‐scale environmentally associated spatial structure of lumpfish (Cyclopterus lumpus) across the Northwest Atlantic. Evolutionary Applications 16(9): 1619-1636.

Marine & aquatic ecologyJournal article
2023 · Published · CSAS Report

Pre-COSEWIC review of anadromous Atlantic salmon (Salmo salar) in Canada, Part 1: Designatable Units

Lehnert, SJ; Bradbury, IR; April, J; Wringe, BF; Van Wyngaarden, M; Bentzen, P;. 2023. Pre-COSEWIC review of anadromous Atlantic salmon (Salmo salar) in Canada, Part 1: Designatable Units. Canadian Stock Assessment Secretariat Research Document 2023(26): 1919-5044.

Atlantic salmonCSAS Report
2023 · Published · Journal article

Whole‐genome sequencing reveals fine‐scale environment‐associated divergence near the range limits of a temperate reef fish

Nugent, C. M.; Kess, T.; Brachmann, M. K.; Langille, B. L.; Duffy, S. J.; Lehnert, S. J.; Wringe, B. F.; Bentzen, P.; Bradbury, I. R;. 2023. Whole‐genome sequencing reveals fine‐scale environment‐associated divergence near the range limits of a temperate reef fish. Molecular Ecology 32(17): 4742-4762.

Evolutionary genomicsJournal article
2023 · Published · Journal article

Integrating seascape resistances and gene flow to produce area-based metrics of functional connectivity for marine conservation planning

Wilcox, M. A.; Jeffery, N. W.; DiBacco, C.; Bradbury, I. R.; Lowen, B.; Wang, Z.; Beiko, R. G.; Stanley, R. R. E;. 2023. Integrating seascape resistances and gene flow to produce area-based metrics of functional connectivity for marine conservation planning. Landscape Ecology 38(9): 2189-2205.

Marine & aquatic ecologyJournal article
2022 · Published · CSAS Report

Evaluation of potential direct genetic effects of the proposed Atlantic salmon (Salmo salar) aquaculture site expansion in southern Newfoundland

Bradbury, I. R.; Duffy, S.; Lehnert, S.; Johannsson, R.; Hlodver Fridriksson, J.; Castellani, M.; Burgetz, I.; Sylvester, E.; Messmer, A.; Kelly, N.; Fleming, I. A.. 2022. Evaluation of potential direct genetic effects of the proposed Atlantic salmon (Salmo salar) aquaculture site expansion in southern Newfoundland. DFO Canadian Science Advisory Secretariat Research Document: 2019/074.

Atlantic salmonCSAS Report
2022 · Published · CSAS Report

Évaluation des possibles effets génétiques directs du projet de création de nouveaux sites d'aquaculture de saumon de l'Atlantique (Salmo salar) dans le sud de TerreNeuveetLabrador

Bradbury, Ian; Duffy, Steve; Lehnert, Sarah; Johannsson, Ragnar; Castellani, Marco; Burgetz, Ingrid; Sylvester, Emma; Messmer, Amber; Kelly, Nicholas; Fleming, Ian;. 2022. Évaluation des possibles effets génétiques directs du projet de création de nouveaux sites d'aquaculture de saumon de l'Atlantique (Salmo salar) dans le sud de TerreNeuveetLabrador. DFO Canadian Science Advisory Secretariat Research Document.

Marine & aquatic ecologyCSAS Report
2022 · Published · CSAS Report

Evaluation of potential direct genetic effects of the proposed Atlantic salmon (Salmo salar) aquaculture site expansion in southern Newfoundland

Bradbury, Ian; Duffy, Steve; Lehnert, Sarah; Johannsson, Ragnar; Castellani, Marco; Burgetz, Ingrid; Sylvester, Emma; Messmer, Amber; Kelly, Nicholas; Fleming, Ian;. 2022. Evaluation of potential direct genetic effects of the proposed Atlantic salmon (Salmo salar) aquaculture site expansion in southern Newfoundland. Canadian Stock Assessment Secretariat Research Document 2019(74).

Atlantic salmonCSAS Report
2022 · Published · Journal article

Parallel genomic basis of age at maturity across spatial scales in Atlantic Salmon

Kess, T.; Lehnert, S. J.; Bentzen, P.; Duffy, S.; Messmer, A.; Dempson, J. B.; Newport, J.; Whidden, C.; Robertson, M. J.; Chaput, G.; Breau, C.; April, J.; Gillis, C.-A.; Kent, M.; Nugent, C. M.; Bradbury, I. R;. 2022. Parallel genomic basis of age at maturity across spatial scales in Atlantic Salmon. BioRxiv: 2022.09. 09.507321.

Atlantic salmonJournal article
2022 · Published · Journal article

Genomic evidence of recent European introgression into North American farmed and wild Atlantic salmon

Bradbury, I. R.; Lehnert, S. J.; Kess, T.; Van Wyngaarden, M.; Duffy, S.; Messmer, A. M.; Wringe, B.; Karoliussen, S.; Dempson, J. B.; Fleming, I. A.; Solberg, M. F.; Glover, K. A.; Bentzen, P;. 2022. Genomic evidence of recent European introgression into North American farmed and wild Atlantic salmon. Evolutionary Applications 15(9): 1436-1448.

Atlantic salmonJournal article
2022 · Published · Journal article

Morphological consequences of hybridization between farm and wild Atlantic salmon Salmo salar under both wild and experimental conditions

Perriman, B. M.; Bentzen, P.; Wringe, B. F.; Duffy, S.; Islam, S. S.; Fleming, I. A.; Solberg, M. F.; Bradbury, I. R;. 2022. Morphological consequences of hybridization between farm and wild Atlantic salmon Salmo salar under both wild and experimental conditions. Aquaculture Environment Interactions 14: 85-96.

Atlantic salmonJournal article
2022 · Published · Journal article

Distinct early life stage gene expression effects of hybridization among European and North American farmed and wild Atlantic salmon populations

Islam, S. S.; Xue, X.; Caballero‐Solares, A.; Bradbury, I. R.; Rise, M. L.; Fleming, I. A;. 2022. Distinct early life stage gene expression effects of hybridization among European and North American farmed and wild Atlantic salmon populations. Molecular ecology 31(9): 2712-2729.

Atlantic salmonJournal article
2022 · Published · Journal article

Common-garden comparison of relative survival and fitness-related traits of wild, farm, and hybrid Atlantic salmon Salmo salar parr in nature

Crowley, S. E.; Bradbury, I. R.; Messmer, A. M.; Duffy, S. J.; Islam, S. S.; Fleming, I. A;. 2022. Common-garden comparison of relative survival and fitness-related traits of wild, farm, and hybrid Atlantic salmon Salmo salar parr in nature. Aquaculture Environment Interactions 14: 35-52.

Atlantic salmonJournal article
2022 · Published · Journal article

Supergene origin and maintenance in Atlantic cod

Matschiner, M.; Barth, J. M. I.; Tørresen, O. K.; Star, B.; Baalsrud, H. T.; Brieuc, M. S. O.; Pampoulie, C.; Bradbury, I. R.; Jakobsen, K. S.; Jentoft, S;. 2022. Supergene origin and maintenance in Atlantic cod. Nature Ecology & Evolution 6(4): 469-481.

Atlantic codJournal article
2022 · Published · Journal article

Environmentally associated chromosomal structural variation influences fine‐scale population structure of Atlantic Salmon (Salmo salar)

Watson, K. B.; Lehnert, S. J.; Bentzen, P.; Kess, T.; Einfeldt, A.; Duffy, S.; Perriman, B.; Lien, S.; Kent, M.; Bradbury, I. R;. 2022. Environmentally associated chromosomal structural variation influences fine‐scale population structure of Atlantic Salmon (Salmo salar). Molecular Ecology 31(4): 1057-1075.

Atlantic salmonJournal article
2022 · Published · Journal article

Reference genome of lumpfish Cyclopterus lumpus Linnaeus provides evidence of male heterogametic sex determination through the AMH pathway

Holborn, M. K.; Einfeldt, A. L.; Kess, T.; Duffy, S. J.; Messmer, A. M.; Langille, B. L.; Brachmann, M. K.; Gauthier, J.; Bentzen, P.; Knutsen, T. M.; Kent, M.; Boyce, D.; Bradbury, I. R;. 2022. Reference genome of lumpfish Cyclopterus lumpus Linnaeus provides evidence of male heterogametic sex determination through the AMH pathway. Molecular ecology resources 22(4): 1427-1439.

Evolutionary genomicsJournal article
2021 · Published · Journal article

Genomic basis of deep-water adaptation in Arctic Charr (Salvelinus alpinus) morphs

Kess, T.; Dempson, B.; Lehnert SJ; Layton, K.; Einfeldt, A.; Bentzen, P.; Salisbury, S. J.; Messmer, A. M.; Duffy, S.; Ruzzante, D. E.; Nugent, C. M.; Ferguson, M. M.; Leong, J. S.; Koop, B. F.; O’Connell, M. F.; Bradbury, I. R;. 2021. Genomic basis of deep-water adaptation in Arctic Charr (Salvelinus alpinus) morphs. Molecular Ecology 30(18): 4415-4432.

Arctic & freshwater fishJournal article
2021 · Published · Journal article

Range-wide genetic assignment over half a century reveals long-distance migration in Atlantic salmon

Bradbury, I. R.; Lehnert, S. J.; Messmer, A.; Duffy, S. J.; Verspoor, E.; Kess, T.; Gilbey, J.; Wennevik, V.; Robertson, M.; Chaput, G.; Sheehan, T.; Bentzen, P.; Dempson, J. B.; Reddin, D;. 2021. Range-wide genetic assignment over half a century reveals long-distance migration in Atlantic salmon. ICES Journal of Marine Science 78(4): 1434-1443.

Atlantic salmonJournal article
2021 · Published · Journal article

A putative structural variant and environmental variation associated with genomic divergence across the Northwest Atlantic in Atlantic Halibut

Kess, T.; Einfeldt, A. L.; Wringe, B.; Lehnert, S. J.; Layton, K. K. S.; McBride, M. C.; Robert, D.; Fisher, J.; Le Bris, A.; den Heyer, C.; Shackell, N.; Ruzzante, D. E.; Bentzen, P.; Bradbury, I. R;. 2021. A putative structural variant and environmental variation associated with genomic divergence across the Northwest Atlantic in Atlantic Halibut. ICES Journal of Marine Science 78(7): 2371-2384.

Evolutionary genomicsJournal article
2021 · Published · Journal article

Genomic basis of deep‐water adaptation in Arctic Charr (Salvelinus alpinus) morphs

Kess, T.; Dempson, J. B.; Lehnert, S. J.; Layton, K. K. S.; Einfeldt, A.; Bentzen, P.; Salisbury, S. J.; Messmer, A. M.; Duffy, S.; Ruzzante, D. E.; Nugent, C. M.; Ferguson, M. M.; Leong, J. S.; Koop, B. F.; O’Connell, M. F.; Bradbury, I. R;. 2021. Genomic basis of deep‐water adaptation in Arctic Charr (Salvelinus alpinus) morphs. Molecular Ecology 30(18): 4415-4432.

Arctic & freshwater fishJournal article
2021 · Published · Journal article

Genomic stability through time despite decades of exploitation in cod on both sides of the Atlantic

Pinsky, M. L.; Eikeset, A. M.; Helmerson, C.; Bradbury, I. R.; Bentzen, P.; Morris, C.; Gondek-Wyrozemska, A. T.; Baalsrud, H. T.; Brieuc, M. S. O.; Kjesbu, O. S.; Godiksen, J. A.; Barth, J. M. I.; Matschiner, M.; Stenseth, N. C.; Jakobsen, K. S.; Jentoft, S.; Star, B;. 2021. Genomic stability through time despite decades of exploitation in cod on both sides of the Atlantic. Proceedings of the National Academy of Sciences 118(15): e2025453118.

Atlantic codJournal article
2021 · Published · Journal article

Range-wide genetic assignment confirms long-distance oceanic migration in Atlantic salmon over half a century

Bradbury, I. R.; Lehnert, S. J.; Messmer, A.; Duffy, S. J.; Verspoor, E.; Kess, T.; Gilbey, J.; Wennevik, V.; Robertson, M.; Chaput, G.; Sheehan, T.; Bentzen, P.; Dempson, J. B.; Reddin, D;. 2021. Range-wide genetic assignment confirms long-distance oceanic migration in Atlantic salmon over half a century. ICES Journal of Marine Science 78(4): 1434-1443.

Atlantic salmonJournal article
2021 · Published · Journal article

Chromosome level reference of Atlantic halibut Hippoglossus hippoglossus provides insight into the evolution of sexual determination systems

Einfeldt, A. L.; Kess, T.; Messmer, A.; Duffy, S.; Wringe, B. F.; Fisher, J.; den Heyer, C.; Bradbury, I. R.; Ruzzante, D. E.; Bentzen, P;. 2021. Chromosome level reference of Atlantic halibut Hippoglossus hippoglossus provides insight into the evolution of sexual determination systems. Molecular ecology resources 21(5): 1686-1696.

Marine & aquatic ecologyJournal article
2021 · Published · Journal article

Genomic evidence of past and future climate-linked loss in a migratory Arctic fish

Layton, K. K. S.; Snelgrove, P. V. R.; Dempson, J. B.; Kess, T.; Lehnert, S. J.; Bentzen, P.; Duffy, S. J.; Messmer, A. M.; Stanley, R. R. E.; DiBacco, C.; Salisbury, S. J.; Ruzzante, D. E.; Nugent, C. M.; Ferguson, M. M.; Leong, J. S.; Koop, B. F.; Bradbury, I. R;. 2021. Genomic evidence of past and future climate-linked loss in a migratory Arctic fish. Nature Climate Change 11(2): 158-165.

Climate adaptationJournal article
2020 · Published · Published Abstract

Identifying Genomic Adaptation and Predicting Future Responses to Climate Change in Atlantic Salmon Populations

Lehnert, Sarah; Layton, Kara; Kess, Tony; Bentzen, Paul; Kent, Matthew; Lien, Sigbjorn; Bradbury, Ian;. 2020. Identifying Genomic Adaptation and Predicting Future Responses to Climate Change in Atlantic Salmon Populations. American Fisheries Society 150th Annual Meeting.

Atlantic salmonPublished Abstract
2020 · Published · Published Abstract

Model Based Investigation of the Genetic and Demographic Impacts of Escaped Farmed Atlantic Salmon on Wild Populations in the Canadian Maritimes Region.

Wringe, Brendan; Raab, Dustin; Reader, Jeffrey M; Bradbury, Ian; Fridriksson, Jon Hlodver; Lehnert, Sarah; Kess, Tony;. 2020. Model Based Investigation of the Genetic and Demographic Impacts of Escaped Farmed Atlantic Salmon on Wild Populations in the Canadian Maritimes Region.. American Fisheries Society 150th Annual Meeting.

Atlantic salmonPublished Abstract
2020 · Published · Journal article

Beyond hybridization: the genetic impacts of nonreproductive ecological interactions of salmon aquaculture on wild populations

Bradbury, I. R.; Burgetz, I.; Coulson, M. W.; Verspoor, E.; Gilbey, J.; Lehnert, S. J.; Kess, T.; Cross, T. F.; Vasemägi, A.; Solberg, M. F;. 2020. Beyond hybridization: the genetic impacts of nonreproductive ecological interactions of salmon aquaculture on wild populations. Aquaculture environment interactions 12: 429-445.

Atlantic salmonJournal article
2020 · Published · Published abstract

Live Symposium: Fisheries Genomics: Illuminating the Past, Present, and Future of Exploited Fish Populations

Kess, Tony; Lehnert, Sarah; Therkildsen, Nina Overgaard; Bradbury, Ian;. 2020. Live Symposium: Fisheries Genomics: Illuminating the Past, Present, and Future of Exploited Fish Populations. American Fisheries Society 150th Annual Meeting.

Evolutionary genomicsPublished abstract
2020 · Published · Journal article

Limited genetic parallelism underlies recent, repeated incipient speciation in geographically proximate populations of an Arctic fish (Salvelinus alpinus)

Salisbury, S. J.; McCracken, G. R.; Perry, R.; Keefe, D.; Layton, K. K. S.; Kess, T.; Nugent, C. M.; Leong, J. S.; Bradbury, I. R.; Koop, B. F.; Ferguson, M. M.; Ruzzante, D. E;. 2020. Limited genetic parallelism underlies recent, repeated incipient speciation in geographically proximate populations of an Arctic fish (Salvelinus alpinus). Molecular Ecology 29(22): 4280-4294.

Arctic & freshwater fishJournal article
2020 · Published · Journal article

A molecular assessment of infectious agents carried by Atlantic salmon at sea and in three eastern Canadian rivers, including aquaculture escapees and North American and European origin wild stocks

Teffer, A. K.; Carr, J.; Tabata, A.; Schulze, A.; Bradbury, I. R.; Deschamps, D.; Gillis, C.-A.; Brunsdon, E. B.; Mordecai, G.; Miller, K. M;. 2020. A molecular assessment of infectious agents carried by Atlantic salmon at sea and in three eastern Canadian rivers, including aquaculture escapees and North American and European origin wild stocks. Facets 5(1): 234-263.

Atlantic salmonJournal article
2020 · Published · Journal article

Model-based evaluation of the genetic impacts of farm-escaped Atlantic salmon on wild populations

Bradbury, I. R.; Duffy, S.; Lehnert, S. J.; Jóhannsson, R.; Fridriksson, J. H.; Castellani, M.; Burgetz, I.; Sylvester, E.; Messmer, A.; Layton, K.; Kelly, N.; Dempson, J. B.; Fleming, I. A;. 2020. Model-based evaluation of the genetic impacts of farm-escaped Atlantic salmon on wild populations. Aquaculture Environment Interactions 12: 45-59.

Atlantic salmonJournal article
2020 · Published · Journal article

Multiple decades of stocking has resulted in limited hatchery introgression in wild brook trout (Salvelinus fontinalis) populations of Nova Scotia

Lehnert, S. J.; Baillie, S. M.; MacMillan, J.; Paterson, I. G.; Buhariwalla, C. F.; Bradbury, I. R.; Bentzen, P;. 2020. Multiple decades of stocking has resulted in limited hatchery introgression in wild brook trout (Salvelinus fontinalis) populations of Nova Scotia. Evolutionary Applications 13(5): 1069-1089.

Arctic & freshwater fishJournal article
2020 · Published · Journal article

Resolving fine‐scale population structure and fishery exploitation using sequenced microsatellites in a northern fish

Layton, K. K. S.; Dempson, B.; Snelgrove, P. V. R.; Duffy, S. J.; Messmer, A. M.; Paterson, I. G.; Jeffery, N. W.; Kess, T.; Horne, J. B.; Salisbury, S. J.; Ruzzante, D. E.; Bentzen, P.; Côté, D.; Nugent, C. M.; Ferguson, M. M.; Leong, J. S.; Koop, B. F.; Bradbury, I. R;. 2020. Resolving fine‐scale population structure and fishery exploitation using sequenced microsatellites in a northern fish. Evolutionary Applications 13(5): 1055-1068.

Evolutionary genomicsJournal article
2019 · Published · International Report

Working group on North Atlantic salmon (WGNAS)

Ahlbeck-Bergendahl, Ida; April, Julien; Bardarson, Hlynur; Bolstad, Geir H; Bradbury, Ian; Buoro, Mathieu; Chaput, Gerald; Dauphin, Guillaume; Ensing, Dennis; Erkinaro, Jaakko;. 2019. Working group on North Atlantic salmon (WGNAS)..

Atlantic salmonInternational Report
2019 · Published · Journal article

Demographic and genetic description of Greenland's only indigenous Atlantic salmon Salmo salar population

Arnekleiv, Jo V; Davidsen, Jan G; Sheehan, Timothy F; Lehnert, Sarah J; Bradbury, Ian R; Rønning, Lars; Sjursen, Aslak D; Kjærstad, Gaute; Lubinski, Barbara A; Nilssen, Kjell J;. 2019. Demographic and genetic description of Greenland's only indigenous Atlantic salmon Salmo salar population. Journal of fish biology 94(1): 154-164.

Atlantic salmonJournal article
2019 · Published · Journal article

Estimating the relative fitness of escaped farmed salmon offspring in the wild and modelling the consequences of invasion for wild populations

Sylvester, Emma VA; Wringe, Brendan F; Duffy, Steven J; Hamilton, Lorraine C; Fleming, Ian A; Castellani, Marco; Bentzen, Paul; Bradbury, Ian R;. 2019. Estimating the relative fitness of escaped farmed salmon offspring in the wild and modelling the consequences of invasion for wild populations. Evolutionary Applications 12(4): 705-717.

Atlantic salmonJournal article
2019 · Published · Journal article

Development and evaluation of SNP panels for the detection of hybridization between wild and escaped Atlantic salmon (Salmo salar) in the western Atlantic

Wringe, Brendan F; Anderson, Eric C; Jeffery, Nicholas W; Stanley, Ryan RE; Bradbury, Ian R;. 2019. Development and evaluation of SNP panels for the detection of hybridization between wild and escaped Atlantic salmon (Salmo salar) in the western Atlantic. Canadian journal of fisheries and aquatic sciences 76(5): 695-704.

Atlantic salmonJournal article
2019 · Published · Journal article

Fine-scale temperature-associated genetic structure between inshore and offshore populations of sea scallop (Placopecten magellanicus)

Lehnert, Sarah J; DiBacco, Claudio; Van Wyngaarden, Mallory; Jeffery, Nicholas W; Ben Lowen, J; Sylvester, Emma VA; Wringe, Brendan F; Stanley, Ryan RE; Hamilton, Lorraine C; Bradbury, Ian R;. 2019. Fine-scale temperature-associated genetic structure between inshore and offshore populations of sea scallop (Placopecten magellanicus). Heredity 122(1): 69-80.

Climate adaptationJournal article
2018 · Published · Journal article

GPs and spiritual care: signed up or souled out? A quantitative analysis of GP trainers’ understanding and application of the concept of spirituality

Appleby, Alistair; Swinton, John; Bradbury, Ian; Wilson, Philip;. 2018. GPs and spiritual care: signed up or souled out? A quantitative analysis of GP trainers’ understanding and application of the concept of spirituality. Education for Primary Care 29(6): 367-375.

Marine & aquatic ecologyJournal article
2018 · Published · CSAS Report

Status of Atlantic salmon (Salmo salar L.) stocks within the Newfoundland and Labrador region (Salmon Fishing Areas 1-14B), 2016

Veinott, Geoffrey; Robertson, MJ; Bradbury, I; Dempson, JB; Grant, C; Kelly, N; Whalen, J; Poole, R;. 2018. Status of Atlantic salmon (Salmo salar L.) stocks within the Newfoundland and Labrador region (Salmon Fishing Areas 1-14B), 2016. Canadian Stock Assessment Secretariat Research Document 2018(8).

Atlantic salmonCSAS Report
2018 · Published · Journal article

Migration effort and wild population size influence the prevalence of hybridization between escaped farmed and wild Atlantic salmon

Sylvester, Emma VA; Wringe, Brendan F; Duffy, Steven J; Hamilton, Lorraine C; Fleming, Ian A; Bradbury, Ian R;. 2018. Migration effort and wild population size influence the prevalence of hybridization between escaped farmed and wild Atlantic salmon. Aquaculture Environment Interactions 10: 401-411.

Atlantic salmonJournal article
2018 · Published · Journal article

Oceanographic variation influences spatial genomic structure in the sea scallop, Placopecten magellanicus

Van Wyngaarden, Mallory; Snelgrove, Paul VR; DiBacco, Claudio; Hamilton, Lorraine C; Rodríguez‐Ezpeleta, Naiara; Zhan, Luyao; Beiko, Robert G; Bradbury, Ian R;. 2018. Oceanographic variation influences spatial genomic structure in the sea scallop, Placopecten magellanicus. Ecology and Evolution 8(5): 2824-2841.

Evolutionary genomicsJournal article
2018 · Published · Journal article

Genotyping‐by‐sequencing of genome‐wide microsatellite loci reveals fine‐scale harvest composition in a coastal Atlantic salmon fishery

Bradbury, Ian R; Wringe, Brendan F; Watson, Beth; Paterson, Ian; Horne, John; Beiko, Robert; Lehnert, Sarah J; Clément, Marie; Anderson, Eric C; Jeffery, Nicholas W;. 2018. Genotyping‐by‐sequencing of genome‐wide microsatellite loci reveals fine‐scale harvest composition in a coastal Atlantic salmon fishery. Evolutionary Applications 11(6): 918-930.

Atlantic salmonJournal article
2018 · Published · Journal article

Genomewide evidence of environmentally mediated secondary contact of European green crab (Carcinus maenas) lineages in eastern North America

Jeffery, Nicholas W; Bradbury, Ian R; Stanley, Ryan RE; Wringe, Brendan F; Van Wyngaarden, Mallory; Lowen, J Ben; McKenzie, Cynthia H; Matheson, Kyle; Sargent, Philip S; DiBacco, Claudio;. 2018. Genomewide evidence of environmentally mediated secondary contact of European green crab (Carcinus maenas) lineages in eastern North America. Evolutionary Applications 11(6): 869-882.

Evolutionary genomicsJournal article
2018 · Published · Journal article

Ancient chromosomal rearrangement associated with local adaptation of a postglacially colonized population of Atlantic Cod in the northwest Atlantic

Sinclair‐Waters, Marion; Bradbury, Ian R; Morris, Corey J; Lien, Sigbjørn; Kent, Matthew P; Bentzen, Paul;. 2018. Ancient chromosomal rearrangement associated with local adaptation of a postglacially colonized population of Atlantic Cod in the northwest Atlantic. Molecular ecology 27(2): 339-351.

Atlantic codJournal article
2017 · Published · Journal article

Identifying patterns of dispersal, connectivity and selection in the sea scallop, Placopecten magellanicus, using RAD seq‐derived SNP s

Van Wyngaarden, Mallory; Snelgrove, Paul VR; DiBacco, Claudio; Hamilton, Lorraine C; Rodríguez‐Ezpeleta, Naiara; Jeffery, Nicholas W; Stanley, Ryan RE; Bradbury, Ian R;. 2017. Identifying patterns of dispersal, connectivity and selection in the sea scallop, Placopecten magellanicus, using RAD seq‐derived SNP s. Evolutionary Applications 10(1): 102-117.

Evolutionary genomicsJournal article
2017 · Published · Journal article

Influence of climate and abundance on migration timing of adult Atlantic salmon (S almo salar) among rivers in N ewfoundland and L abrador

Dempson, Brian; Schwarz, Carl J; Bradbury, Ian R; Robertson, Martha J; Veinott, Geoffrey; Poole, Rebecca; Colbourne, Eugene;. 2017. Influence of climate and abundance on migration timing of adult Atlantic salmon (S almo salar) among rivers in N ewfoundland and L abrador. Ecology of Freshwater Fish 26(2): 247-259.

Atlantic salmonJournal article
2016 · Published · Journal article

Preferential amplification of repetitive DNA during Next Generation Sequencing library creation of ancient DNA

Star, Bastiaan; Hansen, Marianne Helén Selander; Skage, Morten; Bradbury, Ian R; Godiksen, Jane Amtoft; Kjesbu, Olav Sigurd; Jentoft, Sissel;. 2016. Preferential amplification of repetitive DNA during Next Generation Sequencing library creation of ancient DNA. STAR: Science & Technology of Archaeological Research 2(1).

Marine & aquatic ecologyJournal article
2016 · Published · Journal article

Complex post-larval dispersal processes in Atlantic cod revealed by age-based genetics and relatedness analysis

Horne, John B; Bradbury, Ian R; Paterson, Ian G; Hardie, David; Hutchings, Jeffrey; Laurel, Benjamin J; Snelgrove, Paul VR; Morris, Corey J; Gregory, Robert S; Bentzen, Paul;. 2016. Complex post-larval dispersal processes in Atlantic cod revealed by age-based genetics and relatedness analysis. Marine Ecology Progress Series 556: 237-250.

Atlantic codJournal article
2016 · Published · Journal article

Genetic mixed-stock analysis disentangles spatial and temporal variation in composition of the West Greenland Atlantic Salmon fishery

Bradbury, Ian R; Hamilton, Lorraine C; Sheehan, Timothy F; Chaput, Gerald; Robertson, Martha J; Dempson, J Brian; Reddin, David; Morris, Vicki; King, Timothy; Bernatchez, Louis;. 2016. Genetic mixed-stock analysis disentangles spatial and temporal variation in composition of the West Greenland Atlantic Salmon fishery. ICES Journal of Marine Science 73(9): 2311-2321.

Atlantic salmonJournal article
2016 · Published · Journal article

Regional variation in otolith geochemistry of juvenile Atlantic cod (Gadus morhua) in coastal Newfoundland

Stanley, Ryan RE; DiBacco, Claudio; Thorrold, Simon R; Snelgrove, Paul VR; Morris, Corey J; Gregory, Robert S; Campana, Steven E; Bradbury, Ian R;. 2016. Regional variation in otolith geochemistry of juvenile Atlantic cod (Gadus morhua) in coastal Newfoundland. Canadian Journal of Fisheries and Aquatic Sciences 73(10): 1507-1519.

Atlantic codJournal article
2016 · Published · Journal article

Preferential amplification of repetitive DNA during whole genome sequencing library creation from historic samples

Star, Bastiaan; Hansen, Marianne HS; Skage, Morten; Bradbury, Ian R; Godiksen, Jane A; Kjesbu, Olav S; Jentoft, Sissel;. 2016. Preferential amplification of repetitive DNA during whole genome sequencing library creation from historic samples. STAR: Science & Technology of Archaeological Research 2(1): 36-45.

Evolutionary genomicsJournal article
2016 · Published · Journal article

Population structure of Atlantic mackerel inferred from RAD‐seq‐derived SNP markers: Effects of sequence clustering parameters and hierarchical SNP selection

Rodríguez‐Ezpeleta, Naiara; Bradbury, Ian R; Mendibil, Iñaki; Álvarez, Paula; Cotano, Unai; Irigoien, Xabier;. 2016. Population structure of Atlantic mackerel inferred from RAD‐seq‐derived SNP markers: Effects of sequence clustering parameters and hierarchical SNP selection. Molecular ecology resources 16(4): 991-1001.

Evolutionary genomicsJournal article
2016 · Published · Journal article

Complete mitochondrial genomes for Icelus spatula, Aspidophoroides olrikii and Leptoclinus maculatus: pan-Arctic marine fishes from Canadian waters

Swanburg, Taylor; Horne, John B; Baillie, Shauna; King, Stanley D; McBride, Meghan C; Mackley, Michael P; Paterson, Ian G; Bradbury, Ian R; Bentzen, Paul;. 2016. Complete mitochondrial genomes for Icelus spatula, Aspidophoroides olrikii and Leptoclinus maculatus: pan-Arctic marine fishes from Canadian waters. Mitochondrial DNA Part A 27(4): 2982-2983.

Evolutionary genomicsJournal article
2015 · Published · International Report

Genetic mixed stock analysis of three Northwest Atlantic salmon fisheries: Labrador, Saint Pierre and Miquelon, and West Greenland

Bradbury, Ian R; Hamilton, Lorraine C; Chaput, Gerald; Sheehan, Timothy F; Robertson, Martha J; Poole, Rebecca; Goraguer, Herlé; Dempson, J. Brian;. 2015. Genetic mixed stock analysis of three Northwest Atlantic salmon fisheries: Labrador, Saint Pierre and Miquelon, and West Greenland. ICES WGNAS Working Paper, March 2015.

Atlantic salmonInternational Report
2015 · Published · CSAS Report

The potential direct and indirect genetic consequences for native Newfoundland Atlantic Salmon from interbreeding with European-origin farm escapes

Verspoor, Eric; McGinnity, P; Bradbury, I; Glebe, B;. 2015. The potential direct and indirect genetic consequences for native Newfoundland Atlantic Salmon from interbreeding with European-origin farm escapes. DFO Canadian Science Advisory Secretariat Research Document 2015/030: viii + 36 p..

Atlantic salmonCSAS Report
2015 · Published · Journal article

Genetic evidence of local exploitation of Atlantic salmon in a coastal subsistence fishery in the Northwest Atlantic

Bradbury, Ian R; Hamilton, Lorraine C; Rafferty, Sara; Meerburg, David; Poole, Rebecca; Dempson, J Brian; Robertson, Martha J; Reddin, David G; Bourret, Vincent; Dionne, Mélanie;. 2015. Genetic evidence of local exploitation of Atlantic salmon in a coastal subsistence fishery in the Northwest Atlantic. Canadian Journal of Fisheries and Aquatic Sciences 72(1): 83-95.

Atlantic salmonJournal article
2015 · Published · Journal article

Transatlantic secondary contact in Atlantic Salmon, comparing microsatellites, a single nucleotide polymorphism array and restriction‐site associated DNA sequencing for the resolution of complex spatial structure

Bradbury, Ian R; Hamilton, Lorraine C; Dempson, Brian; Robertson, Martha J; Bourret, Vincent; Bernatchez, Louis; Verspoor, Eric;. 2015. Transatlantic secondary contact in Atlantic Salmon, comparing microsatellites, a single nucleotide polymorphism array and restriction‐site associated DNA sequencing for the resolution of complex spatial structure. Molecular Ecology 24(20): 5130-5144.

Atlantic salmonJournal article
2014 · Published · International Report

Quantifying the presence and impact of domesticated Atlantic salmon in the wild: approaches and strategies for studying introgression

Bradbury, Ian R; Coulson, Mark; Cross, Tom; Ostergren, Johan; Bekkevold, Dorte;. 2014. Quantifying the presence and impact of domesticated Atlantic salmon in the wild: approaches and strategies for studying introgression. Working Group on the Application of Genetics in Fisheries and Mariculture, Faro, Portugal.

Atlantic salmonInternational Report
2014 · Published · Journal article

Long distance linkage disequilibrium and limited hybridization suggest cryptic speciation in Atlantic cod

Bradbury, Ian R; Bowman, Sharen; Borza, Tudor; Snelgrove, Paul VR; Hutchings, Jeffrey A; Berg, Paul R; Rodríguez-Ezpeleta, Naiara; Lighten, Jackie; Ruzzante, Daniel E; Taggart, Christopher;. 2014. Long distance linkage disequilibrium and limited hybridization suggest cryptic speciation in Atlantic cod. PLoS One 9(9): e106380.

Atlantic codJournal article
2014 · Published · Journal article

Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci

Moore, Jean‐Sébastien; Bourret, Vincent; Dionne, Mélanie; Bradbury, Ian; O'Reilly, Patrick; Kent, Matthew; Chaput, Gérald; Bernatchez, Louis;. 2014. Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci. Molecular Ecology 23(23): 5680-5697.

Atlantic salmonJournal article
2014 · Published · Journal article

Genetic differentiation and population connectivity in Northwest Atlantic populations of sea scallop, Placopecten magellanicus, using whole-genome scanning

Van Wyngaarden, Mallory; Snelgrove, Paul VR; Hamilton, Lorraine; DiBacco, Claudio; Rodriguez-Ezpeleta, Naiara; Bradbury, Ian R;. 2014. Genetic differentiation and population connectivity in Northwest Atlantic populations of sea scallop, Placopecten magellanicus, using whole-genome scanning. Genome 57(7): 389.

Evolutionary genomicsJournal article
2014 · Published · International Report

6 Term of Reference e): Request from OSPAR:“genetic impacts on ma-rine environment and on wild fish stocks, specifically in connection with introgression of foreign genes, from both hatchery-reared fish and genetically modified fish and invertebrates, in wild populations”

Bekkevold, Dorte; Bradbury, Ian; Coulson, Mark; Cross, Tom;. 2014. 6 Term of Reference e): Request from OSPAR:“genetic impacts on ma-rine environment and on wild fish stocks, specifically in connection with introgression of foreign genes, from both hatchery-reared fish and genetically modified fish and invertebrates, in wild populations”. ICES WGAGFM Report 2014: 60.

Evolutionary genomicsInternational Report
2014 · Published · Journal article

Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA

Star, Bastiaan; Nederbragt, Alexander J; Hansen, Marianne HS; Skage, Morten; Gilfillan, Gregor D; Bradbury, Ian R; Pampoulie, Christophe; Stenseth, Nils Chr; Jakobsen, Kjetill S; Jentoft, Sissel;. 2014. Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA. PLoS One 9(3): e89676.

Marine & aquatic ecologyJournal article
2013 · Published · CSAS Report

Lake Utopia rainbow smelt (Osmerus mordax) status, trends, habitat considerations and threats

Bradford, Rodney Gailand; Bentzen, Paul; Bradbury, Ian Robert;. 2013. Lake Utopia rainbow smelt (Osmerus mordax) status, trends, habitat considerations and threats. DFO Canadian Science Advisory Secretariat Research Document 2013/124: iv + 42 p..

Arctic & freshwater fishCSAS Report
2013 · Published · Journal article

Does fish larval dispersal differ between high and low latitudes?

Leis, Jeffrey M; Caselle, Jennifer E; Bradbury, Ian R; Kristiansen, Trond; Llopiz, Joel K; Miller, Michael J; O'Connor, Mary I; Paris, Claire B; Shanks, Alan L; Sogard, Susan M;. 2013. Does fish larval dispersal differ between high and low latitudes?. Proceedings of the Royal Society B: Biological Sciences 280(1759): 20130327.

Marine & aquatic ecologyJournal article
2013 · Published · Journal article

Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish

Bradbury, Ian R; Hubert, Sophie; Higgins, Brent; Bowman, Sharen; Borza, Tudor; Paterson, Ian G; Snelgrove, Paul VR; Morris, Corey J; Gregory, Robert S; Hardie, David;. 2013. Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish. Evolutionary Applications 6(3): 450-461.

Evolutionary genomicsJournal article
2012 · Published · Journal article

Review on the use of adaptive SNPs and other adaptive markers for genetic identification of populations (breeding stocks)

Cross, Tom; Albaina, Aitor; Bradbury, Ian; Carlsson, Jens; Carvalho, Gary; Dahle, Geir; Gilbey, John; Heylar, Sarah; McGinnity, Phil; Prodohl, Paulo;. 2012. Review on the use of adaptive SNPs and other adaptive markers for genetic identification of populations (breeding stocks). ICES-2011/SSGHIE: 13: 64-733 Report of the Working Group on Application of Genetics in Fisheries and Mariculture (:(Bijdrage Johan Robbens).

Climate adaptationJournal article
2011 · Published · CSAS Report

Genetic and Phenotypic Diversity and Divergence in Sympatric Lake Utopia Rainbow Smelt (Osmerus Mordax)

Bradbury, Ian Robert; Bradford, R; Bentzen, Paul;. 2011. Genetic and Phenotypic Diversity and Divergence in Sympatric Lake Utopia Rainbow Smelt (Osmerus Mordax). DFO Canadian Science Advisory Secretariat Research Document 2011/008: vi + 28 p..

Arctic & freshwater fishCSAS Report
2011 · Published · Journal article

Evaluating SNP ascertainment bias and its impact on population assignment in Atlantic cod, Gadus morhua

Bradbury, Ian R; Hubert, Sophie; Higgins, Brent; Bowman, Sharen; Paterson, Ian G; Snelgrove, Paul VR; Morris, Corey J; Gregory, Robert S; Hardie, David C; Borza, Tudor;. 2011. Evaluating SNP ascertainment bias and its impact on population assignment in Atlantic cod, Gadus morhua. Molecular Ecology Resources 11: 218-225.

Atlantic codJournal article
2010 · Published · Journal article

Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature

Bradbury, Ian R; Hubert, Sophie; Higgins, Brent; Borza, Tudor; Bowman, Sharen; Paterson, Ian G; Snelgrove, Paul VR; Morris, Corey J; Gregory, Robert S; Hardie, David C;. 2010. Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature. Proceedings of the Royal Society B: Biological Sciences 277(1701): 3725.

Atlantic codJournal article
2009 · Published · Book chapter

Postglacial recolonization and the loss of anadromy in rainbow smelt from coastal Newfoundland

Bradbury, Ian R; Coulson, Mark W; Campana, Steven E; Baggs, Eric; Bentzen, Paul;. 2009. Postglacial recolonization and the loss of anadromy in rainbow smelt from coastal Newfoundland. Challenges for diadromous fishes in a dynamic global environment: 79-96.

Arctic & freshwater fishBook chapter
2008 · Published · Book chapter

Rebuilding Atlantic cod: lessons from a spawning ground in coastal Newfoundland

Rose, GA; Bradbury, IR; DeYoung, B; Fudge, SB; Lawson, GL; Mello, LGS; Robichaud, D; Sherwood, G; Snelgrove, PVR; Windle, MJS;. 2008. Rebuilding Atlantic cod: lessons from a spawning ground in coastal Newfoundland. Resiliency of Gadid Stocks to Fishing and Climate Change; Kruse, GH, Drinkwater, K., Ianelli, JN, Link, JS, Stram, DL, Wespestad, V., Woodby, D., Eds: 197-218.

Atlantic codBook chapter
2008 · Published · Journal article

Discrete spatial dynamics in a marine broadcast spawner: re-evaluating scales of connectivity and habitat associations in Atlantic cod (Gadus morhua L.) in coastal Newfoundland

Bradbury, IR; Laurel, BJ; Robichaud, D; Rose, GA; Snelgrove, PVR; Gregory, RS; Cote, D; Windle, MJS;. 2008. Discrete spatial dynamics in a marine broadcast spawner: re-evaluating scales of connectivity and habitat associations in Atlantic cod (Gadus morhua L.) in coastal Newfoundland. Fisheries Research 91(2-3): 299-309.

Atlantic codJournal article
2007 · Published · Journal article

A comparison of twice-versus once-weekly supervision during pulmonary rehabilitation in chronic obstructive pulmonary disease

O’Neill, Brenda; McKevitt, AnneMarie; Rafferty, Sara; Bradley, Judy M; Johnston, Doreen; Bradbury, Ian; McMahon, Joseph;. 2007. A comparison of twice-versus once-weekly supervision during pulmonary rehabilitation in chronic obstructive pulmonary disease. Archives of physical medicine and rehabilitation 88(2): 167-172.

Marine & aquatic ecologyJournal article
2007 · Published · Technical Report

Dispersal, homing, and connectivity in the estuarine fish, Osmerus mordax

Bradbury, Ian R;. 2007. Dispersal, homing, and connectivity in the estuarine fish, Osmerus mordax. Thesis.

Arctic & freshwater fishTechnical Report
2006 · Published · Technical Report

Morphological and genetic differentiation in anadromous smelt Osmerus mordax (Mitchill): disentangling the effects of geography and morphology on gene flow

BRADBURY, IR;COULSON, MW; CAMPANA, SE; Bentzen, P;. 2006. Morphological and genetic differentiation in anadromous smelt Osmerus mordax (Mitchill): disentangling the effects of geography and morphology on gene flow. Journal of Fish Biology 69(Sc): 95-114.

Arctic & freshwater fishTechnical Report
2001 · Published · Journal article

Contrasting larval transport in demersal fish and benthic invertebrates: the roles of behaviour and advective processes in determining spatial pattern

Bradbury, Ian R; Snelgrove, Paul VR;. 2001. Contrasting larval transport in demersal fish and benthic invertebrates: the roles of behaviour and advective processes in determining spatial pattern. Canadian Journal of Fisheries and Aquatic Sciences 58(4): 811-823.

Marine & aquatic ecologyJournal article
2000 · Published · Technical Report

Environmental influences on the distribution and transport of Atlantic cod, Gadus morhua, eggs and larvae in coastal Newfoundland

Bradbury, Ian R;. 2000. Environmental influences on the distribution and transport of Atlantic cod, Gadus morhua, eggs and larvae in coastal Newfoundland. Thesis.

Atlantic codTechnical Report
2000 · Published · CSAS Report

Success and Failure of Atlantic cod, Gadus morhua: a case study from coastal Newfoundland

Bradbury, Ian Robert; Lawson, G; Robichaud, D; Rose, G; Snegrove, PVR;. 2000. Success and Failure of Atlantic cod, Gadus morhua: a case study from coastal Newfoundland. Canadian Stock Assessment Secretariat Research Document 2000(22).

Atlantic codCSAS Report
1999 · Published · Technical Report

Transport and development of cod eggs and larvae in Placentia Bay (3Ps) Newfoundland, 1997-1998

Bradbury, Ian Robert; Snelgrove, Paul Vernon Richards; Fraser, S;. 1999. Transport and development of cod eggs and larvae in Placentia Bay (3Ps) Newfoundland, 1997-1998. Canadian Stock Assessment Secretariat Research Document 99(71).

Atlantic codTechnical Report
1997 · Published · Technical Report

Fecundity of Farmed Northern Atlantic Cod, Gadus Morhua, in Newfoundland: Implications for Cod Stock Enhancement

Bradbury, Ian R;. 1997. Fecundity of Farmed Northern Atlantic Cod, Gadus Morhua, in Newfoundland: Implications for Cod Stock Enhancement. Thesis.

Atlantic codTechnical Report